I'd say frame stretch is not common with the Encore.
However, I do think it's entirely possible to stretch an Encore frame by running hot loads in the larger diameter cases (ie - belted magnums).
Even in the Encore, it's still limited compared to a bolt gun. That's one reason the Ultra Mags and WSM's are offered in the Encore.
MGM recalled all their barrels chambered in the WSM/Ultra Mag chamberings.
Best to stay with the '06 case head even on the Encore if you plan to push the pressure limits.